07:00
08:00
09:00
10:00
11:00
12:00
13:00
14:00
15:00
16:00
17:00
18:00
19:00
7:30 - 8:45 (1h15)
Breakfast
CPL restaurant
8:45 - 9:00 (15min)
Welcome Remarks
La Parrachée
›9:00 (1h)
Keynote: Predicting interaction partners and generating protein sequences using protein language models
Anne-Florence Bitbol
Anne-Florence Bitbol
› La Parrachée
9:00 - 10:00 (1h)
Keynote: Predicting interaction partners and generating protein sequences using protein language models
La Parrachée
Anne-Florence Bitbol
10:00 - 10:30 (30min)
Contributed Talks
La Parrachée
› Protein and genomic language models chart a vast landscape of antiphage defenses
- Mordret Ernest, Institut Pasteur [Paris], Institut National de la Santé et de la Recherche Médicale
10:00-10:30 (30min)
10:30 - 11:00 (30min)
Coffee
mezzanine
11:00 - 12:00 (1h)
Contributed Talks
La Parrachée
› Language Models Outperform Supervised-Only Approaches for Conserved Element Comprehension
- Eyes Robson, University of California [Berkeley]
11:00-11:30 (30min)
› An attention-based model for studying bacterial evolution and epidemiology
- Samuel Horsfield, EMBL-EBI
11:30-12:00 (30min)
12:00 - 13:30 (1h30)
Lunch
CPL restaurant
13:30 - 15:00 (1h30)
Contributed Talks
La Parrachée
› Identification and Classification of Orphan Genes, Spurious Orphan Genes, and Conserved Genes from the human microbiome
- Chen Chen, Chen Chen, Wageningen University
13:30-14:00 (30min)
› A differentiable model for detecting diversifying selection directly from alignments in large-scale bacterial datasets
- Leonie Lorenz, European Bioinformatics Institute [Hinxton]
14:00-14:30 (30min)
› Detecting interspecific positive selection using transformers
- Charlotte West, European Bioinformatics Institute [Hinxton]
14:30-15:00 (30min)
15:00 - 15:30 (30min)
Coffee
mezzanine
15:30 - 16:30 (1h)
Contributed Talks
La Parrachée
› Exploring the space of self-reproducing RNA using generative models
- Martin Weigt, Sorbonne University
15:30-16:00 (30min)
› Generative continuous time model reveals epistatic signatures in protein evolution
- Barrat-Charlaix Pierre, Laboratoire de Biologie Computationnelle Quantitative et Synthétique
16:00-16:30 (30min)
16:30 - 18:30 (2h)
Poster Session
mezzanine
19:15 - 19:15 ()
Dinner
CPL restaurant
